The Fund cooperates effectively with many domestic and international governmental and nongovernmental agencies. The fund's principal partners are:

• UNESCO World Heritage Centre
• Commission of the Russian Federation for UNESCO
• Ministry of Natural Resources and Environment of the Russian Federation
• IUCN - The World Conservation Union
• Greenpeace Russia
• WWF Russia
• Environmental Education Center "Zapovedniks"
• Biodiversity Conservation Center (BCC)
• Institute of Geography of the Russian Academy of Sciences
• Russian Geographical Society
  
• Likhachev Russian Research Institute for Cultural and Natural Heritage
• Geographical Department of the Lomonosov Moscow State University
• ScanEx Research and Development Center (ScanEx R&D Center)
• German Federal Ministry for the Environment, Nature Conservation and Nuclear Safety (BMU)
• German Federal Agency for Nature Conservation (BfN)
• German World Heritage Foundation
• Chair of Land Improvement and Nature Conservation of the Institute of General Ecology and Environmental Protection of Dresden University of Technology
• European Nature Heritage Fund "Euronatur"